Package index • isoniche

Analyse your data

Estimate niche breadth for one or many species, from long-format data.

niche_breadth(): Density-independent and density-dependent niche breadth
summary(<niche_breadth>) print(<summary.niche_breadth>): Summarise niche breadth results and their diagnostics
plot(<niche_breadth>): Plot niche breadth against abundance
iai_curve(): Niche breadth as a function of total abundance
plot(<iai_curve>): Plot niche breadth curves

Prepare your data

community_to_long(): Convert a community matrix to long format
check_coverage(): Sampling coverage of each species and habitat
group_sites(): Group nearby sites into sampling units
radius_sensitivity(): Sensitivity of niche breadth to the grouping radius

Isodars and lower-level tools

Fit isodars and compute niche breadth for one species.

fit_isodars(): Fit isodars
iai(): Isodar-adjusted inequality (IAI)
isoderr(): Bootstrap uncertainty of the isodar-adjusted inequality
pairwise_niche(): Niche breadth indices from pairwise isodar parameters

Data and simulation

moorea_fish: Reef fishes of Moorea in three habitats
simulate_isodars(): Simulate abundances in habitats linked by isodars

Package

isoniche isoniche-package: isoniche: abundance-independent habitat niche breadth